| 引用本文: | 任玉玲, 赵 艳, 赵成周, 李 萍.多刺绿绒蒿WD40基因家族的鉴定及生物信息学分析[J].广西植物,2022,42(9):1561-1571.[点击复制] |
| REN Yuling, ZHAO Yan, ZHAO Chengzhou, LI Ping.Identification and bioinformatics analysis of WD40 gene family of Meconopsis horridula[J].Guihaia,2022,42(9):1561-1571.[点击复制] |
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| 摘要: |
| WD40转录因子家族广泛参与调节植物生长、发育、次生代谢物积累和环境适应等过程。为了探究WD40家族在多刺绿绒蒿生长、发育和次生代谢物积累以及抗逆方面的作用,该研究基于全长转录组测序数据,鉴定了多刺绿绒蒿WD40基因家族成员,并对这些基因及其编码的蛋白进行了生物信息学分析。结果表明:(1)共鉴定到19个WD40基因,编码的蛋白均具有WD40结构域,氨基酸数目为109～758 aa,分子量介于11 830～84 130 Da之间,预测大多数蛋白定位在细胞核中且都为亲水性蛋白;(2)系统进化树分析表明多刺绿绒蒿与罂粟、博落回亲缘关系较近;(3)WD40基因启动子区域均存在数量不等的激素或逆境响应元件,表明该家族基因可能参与植物生长、发育和次生代谢物积累等多种生物学进程的调节;(4)蛋白三级结构显示这些蛋白在进化过程中发生了不同程度的进化。这些结果可为深入研究多刺绿绒蒿WD40基因家族在其响应逆境胁迫和次生代谢物积累等方面的具体机制提供前期基础。 |
| 关键词: 多刺绿绒蒿, WD40, 生物信息学分析, 基因家族, 全长转录组 |
| DOI：10.11931/guihaia.gxzw202108002 |
| 分类号:Q943 |
| 文章编号:1000-3142(2022)09-1561-11 |
| 基金项目:国家自然科学基金(31801281, 31660063); 青海省科技厅基础研究项目(2019-ZJ-970Q); 教育部春晖计划项目(Z2017056); 三江源生态一流学科硕士研究生科技创新项目(2020-STXY-A-b1, 2021-stxy-Y3)[Supported by National Natural Science Foundation of China(31801281, 31660063); Basic Research Project of Qinghai Science and Technology Department(2019-ZJ-970Q); Chunhui Planning Project of the Ministry of Education(Z2017056); Sanjiangyuan Ecology First-Class Discipline Postgraduates Science and Technology Innovation Project(2020-STXY-A-b1, 2021-stxy-Y3)]。 |
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| Identification and bioinformatics analysis of WD40 gene family of Meconopsis horridula |
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REN Yuling1, ZHAO Yan1, ZHAO Chengzhou2*, LI Ping1*
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1. College of Eco-Environmental Engineering, Qinghai University, Xining 810016, China;2. Tibetan Medicine Research
Center/College of Tibetan Medicine, Qinghai University, Xining 810016, China
1. College of Eco-Environmental Engineering, Qinghai University, Xining 810016, China; 2. Tibetan Medicine Research
Center/College of Tibetan Medicine, Qinghai University, Xining 810016, China
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| Abstract: |
| WD40, as a transcription factor family, is widely involved in regulating plant growth, development, secondary metabolite accumulation and environmental adaptation. In order to explore the role of the WD40 family in the growth, development, secondary metabolite accumulation and tolerance, the WD40 genes of Meconopsis horridula were identified in this study based on the full-length transcriptome sequencing data and conducted bioinformatics analysis of these genes and their encoded proteins. The results were as follows:(1)A total of 19 WD40 genes were identified, and all the proteins included typical WD40 domain, the amino acid numbers and molecular weight of the protein encoded by WD40 genes were 109-758 aa and within 11 830-84 130 Da, respectively, and most of the proteins localized in the nucleus, and all proteins belonged to hydrophilic protein;(2)Phylogenetic tree analysis showed that WD40 proteins of Meconopsis horridula were closely to Papaver somniferum and Macleaya cordata;(3)The promoter region of WD40 gene contained different amounts of hormones or stress-response elements, suggesting that this family genes may be involved in the regulation of various biological processes, such as growth, development and secondary metabolite accumulation;(4)The tertiary structure of WD40 proteins showed that these proteins evolved in different degrees during the evolutionary process. These results can provide a preliminary basis for further research on the specific mechanism of WD40 gene family in response to stress and secondary metabolite accumulation. |
| Key words: Meconopsis horridula, WD40, bioinformatics analysis, gene family, full-length transcriptome |
