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1 期 金鑫等: 基于 5 993 个核基因的被子植物系统发育关系研究 5 9
correlated relaxed -clock analysis suggests an earlier origin 2007. Phylogeny of basal eudicots: Insights from non-coding
for flowering plants [ J ]. Proc Natl Acad Sci USAꎬ and rapidly evolving DNA [ J]. Org Divers Evolꎬ 7 (1):
107(13): 5897-5902. 55-77.
SMITH SAꎬ DUNN CWꎬ 2008. Phyutility: A phyloinformatics YANG Zꎬ 2007. PAML 4: Phylogenetic analysis by maximum
tool for treesꎬ alignments and molecular data [J]. Bioinfor ̄ likelihood [J]. Mol Biol Evolꎬ 24:1586-1591.
maticsꎬ 24(5): 715-716. YANG Yꎬ MOORE MJꎬ BROCKINGTON SFꎬ et al.ꎬ 2015.
SOLTIS DEꎬ SMITH SAꎬ CELLINESE Nꎬ et al.ꎬ 2011. Angio ̄ Dissecting molecular evolution in the highly diverse plant
sperm phylogeny: 17 genesꎬ 640taxa [ J ]. Am J Botꎬ clade caryophyllales using transcriptome sequencing [J]. Mol
98(4): 704-730. Biol Evolꎬ 32(8): 2001-2014.
STAMATAKIS Aꎬ 2014. RAxML Version 8: A tool for phyloge ̄ YANG Yꎬ SMITH SAꎬ 2014. Orthology inference in nonmodel
netic analysis and post—analysis of large phylogenies organisms using transcriptomes and low-coverage genomes:
[J]. Bioinformaticsꎬ 30(9): 1312-1313. Improving accuracy and matrix occupancy for phylogenomics
TAKAHASHI Mꎬ CRANE PRꎬ MANCHESTER SRꎬ 2002. Hi ̄ [J]. Mol Biol Evolꎬ 31(11): 3081-3092.
ronoia fusiformis gen. et sp. nov.ꎬ a cornalean fruit from the ZENG LPꎬ ZHANG Nꎬ ZHANG Qꎬ et al.ꎬ 2017. Resolution of
Kamikitaba locality (Upper Cretaceousꎬ Lower Coniacian) deep eudicot phylogeny and their temporal diversification
in northeastern Japan [J]. J Plant Resꎬ 115: 463-473. using nuclear genes from transcriptomic and genomic datasets
THE ANGIOSPERM PHYLOGENY GROUPꎬ 2016. An update [J]. New Phytolꎬ 214(3): 1338-1354.
of the angiosperm phylogeny group classification for the ZENG LPꎬ ZHANG Qꎬ SUN RRꎬ et al.ꎬ 2014. Resolution of
orders and families of flowering plants: APGIV [J]. Bot J deep angiosperm phylogeny using conserved nuclear genes
Linn Socꎬ 181(1): 1-20. and estimates of early divergence times [ J]. Nat Commꎬ
VANDSꎬ 2000. Graph Clustering by Flow Simulation [M]. Uni ̄ 5(1): 4956.
versity of Utrecht. ZHANG Cꎬ SAYYARI Eꎬ MIRARAB Sꎬ 2017. ASTRAL-III:
VONHAESELER Aꎬ MINH BQꎬ NGUYEN MATꎬ 2013. Increased scalability and impacts of contracting low support
Ultrafast approximation for phylogenetic bootstrap [J]. Mol branches [J]. RECOMB-CGꎬ Springerꎬ Cham: 53-75.
Biol Evolꎬ 30(5): 1188-1195. ZHANG Nꎬ ZENG LPꎬ SHAN HYꎬ et al.ꎬ 2012. Highly con ̄
WICKETT NJꎬ MIRARAB Sꎬ NGUYEN Nꎬ et al.ꎬ 2014. served low-copy nuclear genes as effective markers for phylo ̄
Phylotranscriptomic analysis of the origin and early diversifi ̄ genetic analyses in angiosperms [J]. New Phytolꎬ 195(4):
cation of land plants [ J ]. Proc Natl Acad Sci USAꎬ 923-937.
111(45): 4859-4868.
WORBERG Aꎬ QUANDT Dꎬ BARNISKE AMꎬ et al.ꎬ (责任编辑 周翠鸣)