Page 55 - 《广西植物》2026年第9期
P. 55

9 期               王泽寻等: 马先蒿属粗野-缘毛分支叶绿体基因组变异与演化研究                                          1 4 9 1

            观点ꎮ 此外ꎬ我们发现 ndh 基因的假基因化或丢                            究进展 [J]. 广西植物ꎬ 45(3): 466-482.]
            失事件延伸至种下水平ꎬ从而导致了种内叶绿体                              Cho W Bꎬ Choi B Hꎬ Kim J Hꎬ et al.ꎬ 2018. Complete plastome
            基因组的异质性ꎬ这是以往研究未曾关注的ꎮ 在                               sequencing reveals an extremely diminished SSC region in
                                                                 hemiparasitic Pedicularis  ishidoyana  ( Orobanchaceae )
            这些 ndh 基因中ꎬ我们发现 ndhF 基因 状 态 不 稳
                                                                 [J]. Annales Botanici Fenniciꎬ 55(1/ 2/ 3): 171-183.
            定ꎬ如红毛马先蒿中存在 3 种不同的功能状态ꎮ
                                                               Cosner M Eꎬ Raubeson L Aꎬ Jansen R Kꎬ 2004. Chloroplast
            目前ꎬndh 基因假基因化或丢失的机制尚不明确ꎬ
                                                                 DNA rearrangements in Campanulaceae: phylogenetic utility
            已发表的研究表明部分 ndh 基因可能并非植物生                             of highly rearranged genomes [ J ]. BMC Evolutionary
            存所必 需ꎬ 或 者 存 在 某 些 未 知 的 功 能 补 偿 机 制                 Biologyꎬ 4(1): 27.
            (Suorsa et al.ꎬ 2012ꎻ Strand et al.ꎬ 2019)ꎬ因此有     Fan Y Gꎬ Liu R Pꎬ Wang X Yꎬ et al.ꎬ 2025. Complete

            待进一步研究ꎮ                                              chloroplast  genomes  of  19  species  of  Pedicularis
                                                                 ( Orobanchaceae ): comparative genome and phylogenetic
                                                                 analysis [J]. Genetic Resources and Crop Evolutionꎬ 72(5):
            参考文献:                                                5873-5886.

                                                               Fischer Eꎬ 2004. Scrophulariaceae [M] / / Kadereit J W. The
            Acosta M Cꎬ Premoli A Cꎬ 2010. Evidence of chloroplast  families and genera of vascular plants. Berlin: Springer:
              capture  in  South  American  Nothofagus  ( subgenus  333-432.
              Nothofagusꎬ Nothofagaceae) [ J]. Molecular Phylogenetics  Graham S Wꎬ Lam V K Yꎬ Merckx V S F Tꎬ 2017. Plastomes
              and Evolutionꎬ 54(1): 235-242.                     on the edge: the evolutionary breakdown of mycoheterotroph
            Allen G Cꎬ Flores ̄Vergara M Aꎬ Krasynanski Sꎬ et al.ꎬ  plastid genomes [J]. The New Phytologistꎬ 214(1): 48-55.
              2006. A modified protocol for rapid DNA isolation from plant  Guisinger M Mꎬ Chumley T Wꎬ Kuehl J Vꎬ et al.ꎬ 2010.
              tissues using cetyltrimethylammonium bromide [ J]. Nature  Implications of the plastid genome sequence of Typha
              Protocolsꎬ 1(5): 2320-2325.                        (Typhaceaeꎬ Poales) for understanding genome evolution in
            Barrett C Fꎬ Sinn B Tꎬ Kennedy A Hꎬ 2019. Unprecedented  Poaceae [ J ]. Journal of Molecular Evolutionꎬ 70(2):
              parallel photosynthetic losses in a heterotrophic orchid genus  149-166.
              [J]. Molecular Biology and Evolutionꎬ 36(9): 1884-1901.  Jin J Jꎬ Yu W Bꎬ Yang J Bꎬ et al.ꎬ 2020. GetOrganelle: a fast
            Barrett C Fꎬ Wicke Sꎬ Sass Cꎬ 2018. Dense infraspecific  and versatile toolkit for accurate de novo assembly of organelle
              sampling reveals rapid and independent trajectories of  genomes [J]. Genome Biologyꎬ 21(1): 241.
              plastome degradation in a heterotrophic orchid complex  Joh H Jꎬ Park Y Sꎬ Kang J Sꎬ et al.ꎬ 2025. A recent large ̄scale
              [J]. The New Phytologistꎬ 218(3): 1192-1204.       intraspecific IR expansion and evolutionary dynamics of the
            Beier Sꎬ Thiel Tꎬ Münch Tꎬ et al.ꎬ 2017. MISA ̄web: a web  plastome of Peucedanum japonicum [J]. Scientific Reportsꎬ
              server for microsatellite prediction [ J ]. Bioinformaticsꎬ  15: 104.
              33(16): 2583-2585.                               Katoh Kꎬ Standley D Mꎬ 2013. MAFFT multiple sequence
            Birky C W Jrꎬ 1995. Uniparental inheritance of mitochondrial  alignment software version 7: improvements in performance
              and chloroplast genes: mechanisms and evolution [ J ].  and usability [J]. Molecular Biology and Evolutionꎬ 30(4):
              Proceedings of the National Academy of Sciences of the  772-780.
              United States of Americaꎬ 92(25): 11331-11338.   Kearse Mꎬ Moir Rꎬ Wilson Aꎬ et al.ꎬ 2012. Geneious Basic: an
            Capella ̄Gutiérrez Sꎬ Silla ̄Martínez J Mꎬ Gabaldón Tꎬ  integrated and extendable desktop software platform for the
              2009. trimAl: a tool for automated alignment trimming in  organization  and  analysis  of  sequence  data  [ J ].
              large ̄scale phylogenetic analyses [ J ]. Bioinformaticsꎬ  Bioinformaticsꎬ 28(12): 1647-1649.
              25(15): 1972-1973.                               Kim H Tꎬ Chase M Wꎬ 2017. Independent degradation in genes
            Chen C Jꎬ Wu Yꎬ Li J Wꎬ et al.ꎬ 2023. TBtools ̄II: a “one for  of the plastid ndh gene family in species of the orchid genus
              allꎬ all for one” bioinformatics platform for biological big ̄  Cymbidium ( Orchidaceaeꎻ Epidendroideae ) [ J ]. PLoS
              data mining [J]. Molecular Plantꎬ 16(11): 1733-1742.  ONEꎬ 12(11): e0187318.
            Chen L Qꎬ Li R Zꎬ Li Xꎬ et al.ꎬ 2025. Plastome diversity of  Kode Vꎬ Mudd E Aꎬ Iamtham Sꎬ et al.ꎬ 2005. The tobacco
              vascular plants and its acquisition and applications: A review  plastid accD gene is essential and is required for leaf
              [J]. Guihaiaꎬ 45(3): 466-482. [陈丽琼ꎬ 黎若竹ꎬ 李鑫ꎬ       development [J]. The Plant Journalꎬ 44(2): 237-244.
              等ꎬ 2025. 维管植物质体基因组多样性及其获取与应用研                    Konishi Tꎬ Shinohara Kꎬ Yamada Kꎬ et al.ꎬ 1996. Acetyl ̄CoA
   50   51   52   53   54   55   56   57   58   59   60