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4 期 刘夔等: 基于 EST ̄SSR 的钟花樱与近缘种的聚类分析及嫁接亲和性研究 7 6 5
表 2 17 个多态性 EST SSRs 的引物特征
Table 2 Characteristics of 17 polymorphic EST ̄SSRs
引物名称
来源 重复类型 引物序列 SSR 位置 E 值 参考文献
Name of
Origin Repeat type Primer sequence SSR location E value Reference
primer
Hypothetical protein
Prunus jamasakura F: ATGATGCTACCACAAGGGACTCGT
AM287842 (TC) 4 GC(TC) 4 Non ̄CDS [Vitis vinifera] Yoshiaki et al.ꎬ 2009
EST ̄SSRs R: GTTTAGCTGCACATACGCTTTTACCTCC  ̄46
(2×10 )
Hypothetical protein
Prunus jamasakura F: ACACTCGGATCATAGAAATCTCCG
DY638687 (TCT) 4 Non ̄CDS [Vitis vinifera] Yoshiaki et al.ꎬ 2009
EST ̄SSRs R: GTTTCCTGAAACCCTGTTGTCGAAT  ̄36
(3×10 )
Hypothetical protein
Prunus jamasakura F: ACAACTCTTTCTGGGTTCATTGCT
DY640364 (GGT) 4 CDS [Vitis vinifera] Yoshiaki et al.ꎬ 2009
EST ̄SSRs R: GTTTAAAACTCGTATGCTTCCCAAGGGT  ̄42
(1×10 )
Unnamed
Prunus jamasakura F: ACACTCGGATCATAGAAATCTCCG protein product
DY640849 (AG) 19 Non ̄CDS Yoshiaki et al.ꎬ 2009
EST ̄SSRs R: GTTTCCTGAAACCCTGTTGTCGAAT [Vitis vinifera]
 ̄56
(3×10 )
Unknown protein
Prunus jamasakura F: ATGATGCTACCACAAGGGACTCGT
AM287648 (GAA) 5 CDS [Arabidopsis thaliana] Yoshiaki et al.ꎬ 2009
EST ̄SSRs R: GTTTAGCTGCACATACGCTTTTACCTCC  ̄51
(6×10 )
Prunus jamasakura F: ACTGACTCATGCGGTTATATGCAG
DN553427 (TC) 3 TG(TC) 4 Non ̄CDS — Yoshiaki et al.ꎬ 2009
EST ̄SSRs R: GTTTAAGGTCGACAACTACTGTACAATGC
Prunus jamasakura F: ATAGTGCAGTTGAGAAACGAGCAG
DN554499 (TG) 6 (AG) 10 Non ̄CDS — Yoshiaki et al.ꎬ 2009
EST ̄SSRs R: GTTTAAGGTGCAGTTCGTTGTCGATGT
Prunus jamasakura (TA) 3 ATCCCCTCCCACC F: AGACACCCTATCACAATGTCGCAA
DY647422 Non ̄CDS — Yoshiaki et al.ꎬ 2009
EST ̄SSRs ACGAAAATATCC(TC) 5 R: GTTTGCGAACAGCGATAACCTTAATCC
DNA ̄binding protein
Prunus jamasakura F: ACCTCGCTTTTAAGTCTCCCTTGA NtWRKY3
DY650749 (TC) 8 Non ̄CDS Yoshiaki et al.ꎬ 2009
EST ̄SSRs R: GTTTGAGACGGTGAAGTCGGTGATTTCT [Nicotiana tabacum]
 ̄26
(1×10 )
Predicted:
GenBank: transcription factor 自己设计合成
F: CACACACACCTTCTCTCTCCTG
PC1 EE489070.1 (TTTTA) 3 Non ̄CDS divaricata [ Prunus Design and synthesis
R: GTTGTTATTGGTCTTGCTGCTG
EST ̄SSRs mume] by myself
 ̄11
(4×10 )
Hypothetical protein
GenBank: 自己设计合成
F: CAGCCGAACCCTAACAACTCTA PRUPE_ppa016199mg
PC3 EE488462.1 (TC) 16 Non ̄CDS Design and synthesis
R: GAGTACCCTGTTGATCCTGAGC [Prunus persica]
EST ̄SSRs  ̄82 by myself
(4×10 )
Hypothetical protein
GenBank: 自己设计合成
F: AAGGAGAAAGGGAGCTACAACC PRUPE_ppa011869mg
PC6 EE488045.1 (GCA) 6 CDS Design and synthesis
R: AGCCAAGGAGACAACAGAGAAG [Prunus persica]
EST ̄SSRs  ̄71 by myself
(1×10 )
GenBank: 自己设计合成
F: CATGGTGTGGAGCAAAGATTTA
PC8 EE488711.1 (AAATC) 5 Non ̄CDS — Design and synthesis
R: GTTGATACAGATAGGAAGCGGG
EST ̄SSRs by myself
Hypothetical protein
GenBank: 自己设计合成
F: GGCACAAAAGAGAGGAACTTGT PRUPE_ppa002937mg
PC10 EE488225.1 (GCT) 6 CDS Design and synthesis
R: AGGGTTACAGCCTCAATACCAA [Prunus persica]
EST ̄SSRs  ̄112 by myself
(4×10 )
Hypothetical protein
GenBank: 自己设计合成
F: CCAAGCTGACCTAACTTGACCT PRUPE_ppa006091mg
PC11 EE488161.1 (TTC) 10 CDS Design and synthesis
R: TAGCCCCACATGCTACCTCTAT [Prunus persica]
EST ̄SSRs by myself
(2×10  ̄113 )
Hypothetical protein
GenBank: 自己设计合成
F: ATATGGGCTGCGTTTATATTGG PRUPE_ppa002580mg
PC12 DV175423.1 (AGA) 12 Non ̄CDS Design and synthesis
R: GATTGCACATGCCTTTGTCTTA [Prunus persica]
EST ̄SSRs  ̄31 by myself
(2×10 )
Predicted:
GenBank: photosystem Ⅱ 5 kDa 自己设计合成
F: AATTTGCAGAGATGGCTTCC
PC17 EE487895.1 (AGC) 7 CDS proteinꎬ chloroplastic Design and synthesis
R: CTTCTCCTTGGCTTCTTTTGTC
EST ̄SSRs [Prunus mume] by myself
 ̄34
(3×10 )
注: CDS. 编码区域ꎻ Non ̄CDS. 非编码区域ꎮ — 表示未发现ꎮ
Note: CDS. Coding regionꎻ Non ̄CDS. Non ̄coding region. — indicates not discovered.

