Page 20 - 《广西植物》2026年第9期
P. 20

1 4 5 6                                广  西  植  物                                         46 卷
              Mimosoid legume plastome evolution: IR expansionꎬ tandem  特有近危秋海棠叶绿体基因组结构及系统发育分析
              repeat expansionsꎬ and accelerated rate of evolution in clpP  [J]. 种子ꎬ 44(6): 138-149.]

              [J]. Scientific Reportsꎬ 5: 16958.               Jansen R Kꎬ Cai Z Qꎬ Raubeson L Aꎬ et al.ꎬ 2007. Analysis of
            Dong Rꎬ Cao Y Rꎬ 2019. Research progress on the immune  81 genes from 64 plastid genomes resolves relationships in
              regulation of symbiotic nitrogen fixation between legumes and  angiosperms and identifies genome ̄scale evolutionary patterns
              rhizobia [J]. Biotechnology Bulletinꎬ 35(10): 25-33. [董  [J]. Proceedings of the National Academy of Sciences of the
              汝ꎬ 曹扬荣ꎬ 2019. 豆科植物-根瘤菌共生固氮的免疫调                     United States of Americaꎬ 104(49): 19369-19374.

              控机制 [J]. 生物技术通报ꎬ 35(10): 25-33.]                 Jia L Bꎬ Huang Y Jꎬ Sun Hꎬ et al.ꎬ 2017. First fossil of
            Dong S Jꎬ Ying Z Qꎬ Yu S Sꎬ et al.ꎬ 2021. Complete chloroplast  Pterolobium ( Leguminosae ) from the Middle Miocene
              genome of Stephania tetrandra ( Menispermaceae ) from  Yunnanꎬ South China [ J]. Review of Palaeobotany and
              Zhejiang  Province: insights  into  molecular  structuresꎬ  Palynologyꎬ 242: 21-32.
              comparative genome  analysisꎬ  mutational  hotspots  and  Jiang Sꎬ Chen F Lꎬ Qin Pꎬ et al.ꎬ 2022. The specific DNA
              phylogenetic relationships [J]. BMC Genomicsꎬ 22(1): 880.  barcodes based on chloroplast genes for species identification
            Dong W Pꎬ Xu Cꎬ Li C Hꎬ et al.ꎬ 2015. ycf1ꎬ the most  of Theaceae plants [J]. Physiology and Molecular Biology of
              promising plastid DNA barcode of land plants [J]. Scientific  Plantsꎬ 28(4): 837-848.
              Reportsꎬ 5: 8348.                                Jin J Jꎬ Yu W Bꎬ Yang J Bꎬ et al.ꎬ 2020. GetOrganelle: a fast
            Egan A Nꎬ Crandall K Aꎬ 2008. Divergence and diversification  and versatile toolkit for accurate de novo assembly of organelle
              in North American Psoraleeae ( Fabaceae) due to climate  genomes [J]. Genome Biologyꎬ 21(1): 241.
              change [J]. BMC Biologyꎬ 6: 55.                  Katoh Kꎬ Standley D Mꎬ 2013. MAFFT multiple sequence
            Fan Y Jꎬ Huang Lꎬ Su S Dꎬ et al.ꎬ 2023. Identification of  alignment software version 7: improvements in performance
              Papaveraceae based on chloroplast DNA matK+rbcL+trnH-  and usability [J]. Molecular Biology and Evolutionꎬ 30(4):
              psbA [J]. Journal of Kunming Medical Universityꎬ 44(1):  772-780.
              12-18. [范豫杰ꎬ 黄磊ꎬ 苏世达ꎬ 等ꎬ 2023. 基于 matK+          Kawabe Aꎬ Miyashita N Tꎬ 2003. Patterns of codon usage bias
              rbcL+ trnH - psbA 联 合 分 析 法 对 罂 粟 属 的 植 物 鉴 定      in three dicot and four monocot plant species [J]. Genes and
              [J]. 昆明医科大学学报ꎬ 44(1): 12-18.]                      Genetic Systemsꎬ 78(5): 343-352.
            Frazer K Aꎬ Pachter Lꎬ Poliakov Aꎬ et al.ꎬ 2004. VISTA:  Kazempour Osaloo Sꎬ Maassoumi A Aꎬ Murakami Nꎬ 2005.
              computational tools for comparative genomics [ J]. Nucleic  Molecular  systematics  of  the  Old  World  Astragalus
              Acids Researchꎬ 32(Web Server issue): W273-W279.   (Fabaceae) as inferred from nrDNA ITS sequence data
            Greiner Sꎬ Lehwark Pꎬ Bock Rꎬ 2019. OrganellarGenomeDRAW  [J]. Brittoniaꎬ 57(4): 367-381.
              (OGDRAW) version 1.3.1: expanded toolkit for the graphical  Kumar Sꎬ Stecher Gꎬ Suleski Mꎬ et al.ꎬ 2017. TimeTree: a
              visualization of organellar genomes [ J ]. Nucleic Acids  resource for timelinesꎬ timetreesꎬ and divergence times
              Researchꎬ 47(Web Server issue): W59-W64.           [J]. Molecular Biology and Evolutionꎬ 34(7): 1812-1819.
            Han J Zꎬ Lin C Hꎬ Zhu T Tꎬ et al.ꎬ 2025. Comprehensive  Kurtz Sꎬ Choudhuri J Vꎬ Ohlebusch Eꎬ et al.ꎬ 2001. REPuter:
              chloroplast genomic insights into Amaranthus: resolving the  the manifold applications of repeat analysis on a genomic
              phylogenetic and taxonomic status of A. powellii and A.  scale [J]. Nucleic Acids Researchꎬ 29(22): 4633-4642.
              bouchonii [J]. Plantsꎬ 14(5): 649.               Lavin Mꎬ Herendeen P Sꎬ Wojciechowski M Fꎬ 2005.
            Harris L Wꎬ Davies T Jꎬ 2016. A complete fossil ̄calibrated  Evolutionary rates analysis of Leguminosae implicates a rapid
              phylogeny of seed plant families as a tool for comparative  diversification of lineages during the Tertiary [J]. Systematic
              analyses: Testing the ‘ time for speciation ’ hypothesis  Biologyꎬ 54(4): 575-594.
              [J]. PLoS ONEꎬ 11(10): e0162907.                 Li H Eꎬ Guo Q Qꎬ Xu Lꎬ et al.ꎬ 2023. CPJSdraw: analysis and
            Hou Dꎬ Larsen Kꎬ Larsen S Sꎬ 1996. Caesalpiniaceae   visualization of junction sites of chloroplast genomes [ J].
              (Leguminosae ̄Caesalpinioideae) [J]. Flora Malesiana ̄Series  PeerJꎬ 11: e15326.
              1: Spermatophytaꎬ 12(2): 409-730.                Li H Lꎬ Xiao W Jꎬ Tong Tꎬ et al.ꎬ 2021. The specific DNA
            Huang Yꎬ Huang S Cꎬ Deng Tꎬ et al.ꎬ 2025. Chloroplast  barcodes based on chloroplast genes for species identification
              genome structure and phylogenetic analysis of five endangered  of Orchidaceae plants [J]. Scientific Reportsꎬ 11: 1424.
              Begonia grandis species endemic to China [ J]. Seedꎬ 44  Li H Tꎬ Yi T Sꎬ Gao L Mꎬ et al.ꎬ 2019. Origin of angiosperms
              (6): 138-149. [黄扬ꎬ 黄色彩ꎬ 邓涛ꎬ 等ꎬ 2025. 5 种中国         and the puzzle of the Jurassic gap [J]. Nature Plantsꎬ 5(5):
   15   16   17   18   19   20   21   22   23   24   25