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3 期                陈丽琼等: 维管植物质体基因组多样性及其获取与应用研究进展                                            4 8 1

            LUO RBꎬ LIU BHꎬ XIE YLꎬ et al.ꎬ 2012. SOAPdenovo 2: An  QIAN Hꎬ ZHANG Jꎬ ZHAO JCꎬ 2022. How many known
               empirically improved memory ̄efficient short ̄read de novo  vascular plant species are there in the world? An integration
               assembler [J]. Giga Scienceꎬ 1(1): 18-24.         of multiple global plant databases [J]. Biodiversity Scienceꎬ
            MACISZEWSKI Kꎬ FELLS Aꎬ KARNKOWSKA Aꎬ et al.ꎬ        30(7): 22254. [钱宏ꎬ 张健ꎬ 赵静超ꎬ 2022. 世界上已知
               2022. Challenging the importance of plastid genome structure  维管植物有多少种? 基于多个全球植物数据库的整合
               conservation: New insights from Euglenophytes [ J ].  [J]. 生物多样性ꎬ 30(7): 22254.]
               Molecular Biology and Evolutionꎬ 39(12): msac255.  QIU YLꎬ LI LBꎬ WANG Bꎬ et al.ꎬ 2006. The deepest
            MARK WCꎬ MICHAEL FFꎬ 2009. Barcoding of plants and   divergences in land plants inferred from phylogenomic
               fungi [J]. Scienceꎬ 325(5941): 682-683.           evidence [ J ]. Proceedings of the National Academy of
            MCCOY SRꎬ KUEHL JVꎬ BOORE JLꎬ et al.ꎬ 2008. The      Science of USAꎬ 103(42): 15511-15516.
               complete plastid genome sequence of Welwitschia mirabilis:  ROBERT JKꎬ ZHENGQIU Cꎬ RAUBESON ALꎬ et al.ꎬ
               An unusually compact plastome with accelerated divergence  2007. Analysis of 81 genes from 64 plastid genomes resolves
               rates [J]. BMC Evolutionary Biologyꎬ 8(1): 130.   relationships in angiosperms and identifies genome ̄scale
            MCNEAL JRꎬ KUEHL JVꎬ BOORE JLꎬ et al.ꎬ 2007. Complete  evolutionary patterns [ J ]. Proceedings of the National
               plastid genome sequences suggest strong selection for  Academy of Science of USAꎬ 104(49): 19369-19374.
               retention of photosynthetic genes in the parasitic plant genus  ROUSSEAU ̄GUEUTIN Mꎬ HUANG Xꎬ HIGGINSON Eꎬ et al.ꎬ
               Cuscuta [J]. BMC Plant Biologyꎬ 7(1): 57.         2013. Potential functional replacement of the plastidic acetyl ̄
            MILLEN SRꎬ OLMSTEAD GRꎬ ADAMS LKꎬ et al.ꎬ 2001.      CoA Carboxylase subunit (accD) gene by recent transfers to
               Many parallel losses of infA from chloroplast DNA during  the nucleus in some angiosperm lineages [ J ]. Plant
               angiosperm evolution with multiple indepen dent transfers to  Physiologyꎬ 161(4): 1918-1929.
               the nucleus [J]. The Plant Cellꎬ 13(3): 645-658.  RUHLMAN TAꎬ JANSEN RKꎬ 2014. The plastid genomes of
            MO ZQꎬ FU CNꎬ ZHU MSꎬ et al.ꎬ 2022. Resolutionꎬ conflict  flowering plants [M]. Berlin: Springer: 3-38.
               and rate shifts: Insights from a densely sampled plastome  RUHLMAN TAꎬ JANSEN RKꎬ 2018. Aberration or analogy?
               phylogeny for Rhododendron ( Ericaceae) [ J]. Annals of  The atypical plastomes of Geraniaceae [ J]. Advances in
               Botanyꎬ 130(5): 687-701.                          Botanical Researchꎬ 85: 223-262.
            MOLINA Jꎬ HAZZOURI KMꎬ NICKRENT Dꎬ et al.ꎬ 2014.   SARKER Sꎬ SUTHERLAND Mꎬ 2022. Molecular characteri ̄
               Possible loss of the chloroplast genome in the parasitic  sation of a novel pathogenic avipoxvirus from an Australian
               flowering plant Rafflesia lagascae ( Rafflesiaceae ) [ J ].  little crow (Corvus bennetti) directly from the clinical sample
               Molecular Biology and Evolutionꎬ 31(4): 793-803.  [J]. Scientific Reportsꎬ 12(1): 15053.
            MOWER JPꎬ MA PFꎬ GREWE Fꎬ et al.ꎬ 2019. Lycophyte  SHINOZAKI Kꎬ OHME Mꎬ TANAKA Mꎬ et al.ꎬ 1986. The
               plastid genomics: Extreme variation in GCꎬ gene and intron  complete nucleotide sequence of the tobacco chloroplast
               content and multiple inversions between a direct and inverted  genome: Its gene organization and expression [ J]. The
               orientation of the rRNA repeat [J]. The New Phytologistꎬ  EMBO Journalꎬ 5(9): 2043-2049.
               222(2): 1061-1075.                              SINN BTꎬ SEDMAK DDꎬ KELLY LMꎬ et al.ꎬ 2018. Total
            MOWER JPꎬ VICKREY TLꎬ 2018. Structural diversity among  duplication of the small single copy region in the angiosperm
               plastid genomes of land plants [J]. Advances in Botanical  plastome: Rearrangement and inverted repeat instability in
               Researchꎬ 85: 263-292.                            Asarum [J]. American Journal of Botanyꎬ 105(1): 71-84.
            PALMER JDꎬ 1983. Chloroplast DNA exists in two orientations  SOLTIS DEꎬ KUZOFF RKꎬ 1995. Discordance between nuclear
               [J]. Natureꎬ 301(5895): 92-93.                    and  chloroplast  phylogenies  in  the  Heuchera  group
            PARK Sꎬ RUHLMAN TAꎬ WENG MLꎬ et al.ꎬ 2017.           (Saxifragaceae) [J]. Evolutionꎬ 49(4): 727-742.
               Contrasting patterns of nucleotide substitution rates provide  SOORNI Aꎬ HAAK Dꎬ ZAITLIN Dꎬ et al.ꎬ 2017. Organelle_
               insight into dynamic evolution of plastid and mitochondrial  PBAꎬ a pipeline for assembling chloroplast and mitochondrial
               genomes of Geranium [J]. Genome Biology and Evolutionꎬ  genomes from PacBio DNA sequencing data [ J]. BMC
               9(6): 1766-1780.                                  Genomicsꎬ 18(1): 49.
            PING JYꎬ HAO Jꎬ LI JYꎬ et al.ꎬ 2022. Loss of the IR region in  STRAUB SCKꎬ CRONN RCꎬ EDWARDS Cꎬ et al.ꎬ 2013.
               conifer plastomes: Changes in the selection pressure and  Horizontal transfer of DNA from the mitochondrial to the
               substitution rate of protein ̄coding genes [ J]. Ecology and  plastid genome and its subsequent evolution in milk weeds
               Evolutionꎬ 12(1): e8499.                          ( Apocynaceae ) [ J ]. Genome Biology and Evolutionꎬ
            POUCHON Cꎬ BOYER Fꎬ ROQUET Cꎬ et al.ꎬ 2022.          5(10): 1872-1885.
               ORTHOSKIM: In silico sequence capture from genomic and  STRAUB SCKꎬ PARKS Mꎬ WEITEMIER Kꎬ et al.ꎬ 2012.
               transcriptomic libraries for phylogenomic and barcoding  Navigating the tip of the genomic iceberg: Next ̄generation
               applications [ J]. Molecular Ecology Resourcesꎬ 22 ( 5):  sequencing for plant systematics [ J]. American Journal of
               2018-2037.                                        Botanyꎬ 99(2): 349-364.
            PPGꎬ 2016. A community ̄derived classification for extant  SUDIANTO Eꎬ CHAW SMꎬ 2019. Two independent plastid
               lycophytes and ferns [ J ]. Journal of Systematics and  accD transfers to the nuclear genome of Gnetum and other
               Evolutionꎬ 54(6): 563-603.                        insights on Acetyl ̄CoA carboxylase evolution in gymnosperms
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