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3 期               姚淑婷等: 六堡茶群体种叶绿体基因组捕获历史与遗传多样性研究                                            5 4 1

            QIU RJꎬ LONG ZRꎬ YU CPꎬ et al.ꎬ 2020. Investigationꎬ  YANG SXꎬ 2021a. Thinking on the taxonomy of Camellia
               development and protection of the population resources of the  sect. Thea [ J]. Journal of Tea Scienceꎬ 41 ( 4): 439 -
               Liupao tea [J]. China Tea Processing (3): 15-19. [邱瑞  453. [ 杨 世 雄ꎬ 2021a. 茶 组 植 物 的 分 类 历 史 与 思 考
               瑾ꎬ 龙志荣ꎬ 于翠平ꎬ 等ꎬ 2020. 六堡茶群体种资源的调                  [J]. 茶叶科学ꎬ 41(4): 439-453.]
               查、开发和保护 [J]. 中国茶叶加工 (3): 15-19.]                YANG SXꎬ 2021b. Tea ̄plant ( Camellia sect. Thea ) in
            QU XJꎬ MOORE MJꎬ LI DZꎬ et al.ꎬ 2019. PGA: A software  Guangxiꎬ China [ J]. Guangxi Forestry Scienceꎬ 50(4):
               package for rapidꎬ accurateꎬ and flexible batch annotation of  414-416. [杨世雄ꎬ 2021b. 广西的茶树资源 [J]. 广西林
               plastomes [J]. Plant Methodsꎬ 15: 50.             业科学ꎬ 50(4): 414-416.]
            RAMBAUT Aꎬ 2010. FigTree v1.3.1 [CP]. Edinburghꎬ UK:  YANG Yꎬ MOORE MJꎬ BROCKINGTON SFꎬ et al.ꎬ 2015.
               Institute  of  Evolutionary  Biologyꎬ  University  of  Dissecting molecular evolution in the highly diverse plant
               Edinburgh. http:/ / tree.bio.ed.ac.uk/ software/ figtree/ .  clade  Caryophyllales  using  transcriptome  sequencing
            RAMBAUT Aꎬ DRUMMOND AJꎬ XIE Dꎬ et al.ꎬ 2018.         [J]. Molecular Biology Evolutionꎬ 32(8): 2001-2014.
               Posterior summarization in Bayesian phylogenetics using  YE XQꎬ ZHAO ZHꎬ ZHU QWꎬ et al.ꎬ 2014. Entire chloroplast
               Tracer 1.7 [J]. Systematic Biologyꎬ 67(5): 901-904.  genome sequence of tea (Camellia sinensis cv. Longjing 43):
            RIESEBERG   LHꎬ   SOLTIS  DEꎬ  1991.  Phylogenetic   A molecular phylogenetic analysis [J]. Journal of Zhejiang
               consequences of cytoplasmic gene flow in plants [ J ].  University (Agriculture and Life Sciences)ꎬ 40(4): 404-
               American Journal of Botanyꎬ 5(1): 65-84.          412. [叶晓倩ꎬ 赵忠辉ꎬ 朱全武ꎬ 等ꎬ 2014. 茶树‘龙井
            STAMATAKIS   Aꎬ   2006.  RAxML ̄VI ̄HPC:  maximum      43’叶绿体基因组测序及其系统进化(英文) [J]. 浙江大
               likelihood ̄based phylogenetic analyses with thousands of taxa  学学报(农业与生命科学版)ꎬ 40(4): 404-412.]
               and  mixed  models  [ J ].  Bioinformaticsꎬ  22(21):  YI TSꎬ JIN GHꎬ WEN Jꎬ 2015. Chloroplast capture and intra ̄
               2688-2690.                                        and inter ̄continental biogeographic diversification in the
            TENG CQꎬ QIU RJꎬ YU CPꎬ et al.ꎬ 2020. Investigation on the  Asian ̄New  World  disjunct  plant  genus  Osmorhiza
               characteristics and utilization status of wild ancient tea tree  (Apiaceae) [ J]. Molecular Phylogenetics and Evolutionꎬ
               resources in Cenxi City [J]. Southern Agricultureꎬ 14(4):  85: 10-21.
               45-48. [滕翠琴ꎬ 邱瑞瑾ꎬ 于翠平ꎬ 等ꎬ 2020. 岑溪市野生           YU XQꎬ GAO LMꎬ SOLTIS DEꎬ et al.ꎬ 2017. Insights into the
               古茶树资源特征与开发利用现状调查 [J]. 南方农业ꎬ                       historical assembly of East Asian subtropical evergreen
               14(4): 45-48.]                                    broadleaved forests revealed by the temporal history of the tea
            UENO Sꎬ TSUMURA Yꎬ 2009. Development of microsatellite  family [J]. New Phytologistꎬ 215(3): 1235-1248.
               and amplicon length polymorphism markers for Camellia  ZAN Tꎬ HE YTꎬ ZHANG Mꎬ et al.ꎬ 2023. Phylogenomic
               japonica L. from tea plant ( Camellia sinensis) expressed  analyses of Camellia support reticulate evolution among major
               sequence tags [ J]. Molecular Ecology Resourcesꎬ 9(3):  clades [ J ]. Molecular Phylogenetics and Evolutionꎬ
               814-816.                                          182: 107744.
            WANG Hꎬ OOI BCꎬ TAN KLꎬ et al.ꎬ 2003. BLAST + +:                           '
                                                               ZHANG Dꎬ GAO FLꎬ JAKOVLIC Iꎬ et al.ꎬ 2020. PhyloSuite:
               BLASTing queries in batches [J]. Bioinformaticsꎬ19(17):
                                                                 An integrated and scalable desktop platform for streamlined
               2323-2324.
                                                                 molecular sequence data management and evolutionary
            WANG LBꎬ HUANG LYꎬ TENG CQꎬ et al.ꎬ 2022. Genetic and
                                                                 phylogenetics studies [ J]. Molecular Ecology Resourcesꎬ
               phylogenetic analysis for germplasm resources of Camellia
                                                                 20(1): 348-355.
               sinensis from Wuzhou City [J]. Journal of Tea Scienceꎬ 42
                                                               ZHANG Qꎬ QIN XMꎬ LU YBꎬ et al.ꎬ 2023. A comprehensive
               (5): 601-609. [王留彬ꎬ 黄丽蕴ꎬ 滕翠琴ꎬ 等ꎬ 2022. 梧
                                                                 alignment ̄filtering  methodology  improves  phylogeny
               州茶树种质资源的遗传多样性及亲缘关系分析 [J]. 茶
                                                                 particularly by filtering overly divergent segments [ EB/
               叶科学ꎬ 42(5): 601-609.]
                                                                 OL]. https:/ / doi.org/ 10.1101/ 2023.12.26.573321.
            WANG XCꎬ FENG Hꎬ CHANG YXꎬ et al.ꎬ 2020. Population
                                                               ZHANG XTꎬ CHEN Sꎬ SHI LQꎬ et al.ꎬ 2021. Haplotype ̄
               sequencing enhances understanding of tea plant evolution
                                                                 resolved genome assembly provides insights into evolutionary
               [J]. Nature Communicationsꎬ11(1): 4447.
                                                                 history of the tea plant Camellia sinensis [ J ]. Nature
            WU Qꎬ TONG Wꎬ ZHAO HJꎬ et al.ꎬ 2022. Comparative
                                                                 Geneticsꎬ 53(8): 1250-1259.
               transcriptomic analysis unveils the deep phylogeny and
                                                               ZHOU YHꎬ QIAO XYꎬ MA CLꎬ et al.ꎬ 2011. Genetic diversity
               secondary metabolite evolution of 116 Camellia plants
                                                                 and structure of tea landraces from Guangxiꎬ based on EST ̄
               [J]. The Plant Journalꎬ 111(2): 406-421.
                                                                 SSR analysis [ J]. Scientia Silvae Sinicaeꎬ 47 (3): 59 -
            YAN MHꎬ LIU Kꎬ WANG Mꎬ et al.ꎬ 2021. Complete        67. [周炎花ꎬ 乔小燕ꎬ 马春雷ꎬ 等ꎬ 2011. 广西茶树地方
               chloroplast genome of Camellia sinensis cv. Xinyang 10 and  品种遗传多样性和遗传结构的 EST ̄SSR 分析 [J]. 林业
               its phylogenetic evolution [J]. Journal of Tea Scienceꎬ 41
                                                                 科学ꎬ 47(3): 59-67.]
               (6): 777-788. [闫明慧ꎬ 刘柯ꎬ 王满ꎬ 等ꎬ 2021. 信阳 10
               号叶绿体基因组及其系统进化 [J]. 茶叶科学ꎬ 41(6):
                                                                                     (责任编辑  李  莉  王登惠)
               777-788.]
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